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Verweise |
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Autor |
Cadigan, N. G.; Shelton, P. A. |
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Titel |
SAS programs for fitting a seal population dynamics model |
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Journal Article |
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Jahr |
1993 |
Publikation |
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Kurztitel der Zeitschrift |
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Seiten |
37 |
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Schlüsselwörter |
SAS, population, saison, mortalität, modell |
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Zusammenfassung |
This technical report presents a description of two SAS programs (MAKED.SAS and SEAL.SAS) that fit a population dynamics model to seal (Phocidae) data. The programs have been constructed in such a manner that special knowledge of SAS is not required to run them. The population dynamics model is transformed to a standard nonlinear regression model and parameters are estimated using SAS's PROC NLIN. Output from the programs includes estimates of intrinsic mortality, pup numbers over time and total population numbers over time. The code for the programs is presented along with two examples. |
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Department of Fisheries and Oceans, St. John's, Nfld. (Canada). Science Branch |
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1927 |
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1927 |
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nein |
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Rufnummer |
476 |
Signatur |
2277 |
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Autor |
Millar, R. B. |
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Titel |
A versatile computer program for mixed stock fishery composition estimation |
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Jahr |
1990 |
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Kurztitel der Zeitschrift |
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32 |
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Schlüsselwörter |
check-lists; approximation-; computer-programmes; stock-assessment |
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Zusammenfassung |
This technical report describes a FORTRAN program (HISEA.FOR) to be used in the study of mixed stock fishery composition estimation. Program HISEA is a versatile research tool capable of performing analyses. The simplest use of HISEA is to perform a composition analysis. The program can then be run in bootstrap mode to provide a non-parametric estimate of the reliability of the estimated compositions. In simulation mode, HISEA can quantify the effect of changing sample sizes; of adding or removing variables; and of adding or removing stocks. Simulation also identifies potential problems (such as high bias and variance in the composition estimators) that may arise due to different stocks being too alike. |
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Herausgeber |
Department of Fisheries and Oceans, St. John's, Nfld. (Canada) |
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1753 |
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1753 |
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1112 |
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Autor |
Clay, D. |
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Titel |
TUNE: A series of fish stock assessment computer programs written in FORTRAN for microcomputers (MS DOS) |
Typ |
Zeitschrift, Artikel |
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Jahr |
1990 |
Publikation |
Collect. Vol. Sci. Pap. Iccat Recl. Doc. Sci. Cicta Colecc. Doc. Cient. Cicaa |
Kurztitel der Zeitschrift |
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32 |
Ausgabe |
2 |
Seiten |
443-460 |
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Schlüsselwörter |
computer-programmes; system-analysis; ICCAT- |
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Zusammenfassung |
This set of computer programs for stock assessment uses MS FORTRAN 77 version 4.1* for all the programs. The programs will compile under version 3.2 of MS FORTRAN 77, however the Open statements with file types “Unknown” must be changed to “New” or “Old” depending on the expected status of the file. The “shell” called TUNE is used to build the appropriate batch file for submission of the multiple runs used for calibration. Each of these programs is an interactive stand alone module, each can be used independently of the others. This report gives an outline of how and where these programs fit into an analytical process. A set of disks with the source code and the executable (*.EXE) files is available from the editor or the programs can be copied from the ICCAT Secretariat in Madrid; an Annex to this report containing a listing of the source code is also available. A glossary of terms commonly used in the assessment process is presented in Appendix I. |
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312 |
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Permalink für diesen Eintrag |
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Autor |
Shoesmith, E. |
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Titel |
A comparison of methods for estimating mean fecundity |
Typ |
Zeitschrift, Artikel |
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Jahr |
1990 |
Publikation |
J. FISH BIOL. |
Kurztitel der Zeitschrift |
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Band |
36 |
Ausgabe |
1 |
Seiten |
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Schlüsselwörter |
LÄngenfrequenz, normalverteilung, methode, theorie, mathematik, vergleich, statistik |
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Zusammenfassung |
This paper is concerned with certain computational aspects of estimating the mean fecundity of a single age-class of a population of fish. Four computational methods for estimating mean fecundity are compared by Monte Carlo simulation. One of the four methods is the simple expedient of estimating fecundity at sample mean length, a method known to be downwardly biased. The Monte Carlo study shows that the other three methods reduce bias and provide worthwhile efficiency gains. For small samples, the most efficient of the four methods is a “bias adjustment”, proposed here, that uses easily calculated sample statistics. For large samples, a numerical integration method has the highest efficiency. The fourth method, a “direct summation” procedure which can be done easily in many statistical or spreadsheet programs, performs well for all sample sizes. |
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Rufnummer |
212 |
Signatur |
2100 |
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Autor |
Sparre, P. |
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Titel |
A method for the estimation of growth, mortality and gear selection/recruitment parameters from length-frequency samples weighted by catch per effort |
Typ |
Buch, Kapitel |
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Jahr |
1987 |
Publikation |
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Kurztitel der Zeitschrift |
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Band |
13 |
Ausgabe |
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Seiten |
75-102 |
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Schlüsselwörter |
stock-assessment; recruitment-; size-distribution; length-; mathematical-models, marine-fisheries |
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Zusammenfassung |
This paper describes a method and a FORTRAN program for the estimation of von Bertalanffy growth parameters, total mortality rates and gear selection/recruitment parameters from a time series of length-frequency samples weighted by catch per effort (e.g., numbers caught per hour by length class each quarter of the year). The length frequencies are separated into normally distributed components each of which represents a cohort. This method is constructed to allow for continuous, seasonally variable recruitment all year-round and is intended to be used especially for tropical and other fish stocks displaying an appropriate recruitment pattern. |
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MAZZARA-DEL-VALLO,-ITALY |
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Pauly, D.; Morgan, G. R. |
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1592 |
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Autor |
Akamine, T. |
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Titel |
A new standard formula for seasonal growth of fish in population dynamics |
Typ |
Zeitschrift, Artikel |
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Jahr |
1993 |
Publikation |
NIPPON SUISAN GAKKAISHI BULL. JAP. SOC. SCI. FISH. |
Kurztitel der Zeitschrift |
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Band |
59 |
Ausgabe |
11 |
Seiten |
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Schlüsselwörter |
Fisch, wachstum, statistik, modell, population, theorie |
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Zusammenfassung |
This formula is based on the Richards formula, which includes well-known growth formulae, and is invariant for allometry. It is expanded by exchanging the independent variable from time to its function, in other words the cumulative water temperature. This standard formula includes the method of substituting values for the cumulative water temperature into the time term, the mathematical model of adding sine functions to the time term, and switched growth rate models. This standard model is given by general theory, which makes the character of parameters clear and helps to analyze the growth formula statistically. |
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Rufnummer |
453 |
Signatur |
2257 |
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Permalink für diesen Eintrag |
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Autor |
Caputi, N. |
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Titel |
Factors affecting the time series bias in stock-recruitment relationships and the interaction between time series and measurement error bias |
Typ |
Zeitschrift, Artikel |
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Jahr |
1988 |
Publikation |
CAN. J. FISH. AQUAT. SCI. |
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Band |
45 |
Ausgabe |
1 |
Seiten |
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Schlüsselwörter |
Fischerei, statistik, zeitreihe, methode, modell, theorie |
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Zusammenfassung |
The stock-recruitment relationship (SRR) and the recruitment to spawning stock relationship (RSR) of the tiger prawn (Penaeus esculentus ) in Exmouth Gulf, Western Australia, were used to examine the time series bias and measurement error bias by Monte Carlo simulations. Simulating the effect of measurement error as well as the random variation about the SRR and RSR helps to determine the possible combinations of measurement error and random variation which may result in the observed variation about the SRR and RSR. The simulations also indicate that there is an interaction between measurement error and random variation about the SRR/RSR on the bias of the parameters of the SRR. |
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Rufnummer |
434 |
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2238 |
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Autor |
Myers, R. A.; Cadigan, N. G. |
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Titel |
Statistical analysis of catch-at-age data with correlated errors |
Typ |
Zeitschrift, Artikel |
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Jahr |
1995 |
Publikation |
Can. J. Fish. Aquat. Sci. J. Can. Sci. Halieut. Aquat |
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Band |
52 |
Ausgabe |
6 |
Seiten |
1265-1273 |
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Schlüsselwörter |
Fisch, Fischerei, Statistik, Wachstum, Mortalität, VPA, Population, Mathematik, Modell |
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Zusammenfassung |
The statistical model used is extended to estimate abundance from commercial catch-at-age data for many of the major commercial fish species in the world. The model combines commercial catch-at-age data and research survey estimates of fish abundance; extends the model to allow correlated errors among ages within a year for the survey estimates of fish abundance. Method is formulated for modeling the fishing mortality on the oldest ages of the fish caught. Estimates are obtained using maximum likelihood. The level of correlation among ages is sufficiently large to produce large biases in the standard methods for some stocks. The statistical model that includes correlated errors greatly reduces bias and increases efficiency if the correlation in the estimation error is large. |
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Dep. Fish. Oceans, Sci. Branch, Box 5667, St. John's, NF A1C 5X1, Canada |
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Rufnummer |
528 |
Signatur |
2327 |
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Autor |
Akamine, T. |
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Titel |
An interval estimation for the Petersen method using Bayesian statistics |
Typ |
Zeitschrift, Artikel |
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Jahr |
1989 |
Publikation |
Bull. Japan Sea Reg. Fish. Res. Lab. Nissuiken Hokoku |
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39 |
Seiten |
19-35 |
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Schlüsselwörter |
Bayesian, binominal, basic, listing, methode, theorie, algorithmus |
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Zusammenfassung |
The statistical model for the Petersen method is a hypergeometric distribution. Approximation to a binomial distribution has been used, and the usual method for this binomial model is based on approximation to a normal distribution. The Bayesian statistical model for a binomial distribution, which assumes that the prior distribution of parameters is uniform, corresponds well with the conventional method. However, the Bayesian statistical method for a hypergeometric distribution which assumes the uniform prior distribution is not feasible. The prior distribution according to the inverse squared parameter is natural for this model. Beta function and zeta function are important to understand these methods. This model is simpler to understand and easier to calculate by micro-computer than the conventional method. |
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Rufnummer |
218 |
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2106 |
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Autor |
Akamine, T. |
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Titel |
An interval estimation for extraction using Bayesian statistics |
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Zeitschrift, Artikel |
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Jahr |
1989 |
Publikation |
Bull. Japan Sea Reg. Fish. Res. Lab. Nissuiken Hokoku |
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39 |
Seiten |
9-17 |
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Schlüsselwörter |
Bayesian, normalverteilung, binominal, statistik, theorie, algorithmus, listing, basic |
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Zusammenfassung |
The statistical model for extraction is a binomial distribution. The conventional method for employing this binomial model is based on approximation to a normal distribution. The Bayesian statistical method, which assumes that the prior distribution of parameters is uniform, is preferable to the conventional method, and two theorems demonstrate that this model corresponds well with the conventional method. Furthermore, this model is simpler to understand and easier to calculate by micro-computer than the conventional method. |
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Rufnummer |
222 |
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2110 |
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